Chloroplast DB
Home | Search | Blast | Tribes | Organisms | RNA Edits | Links
 
Gene View
 
ID   338
Gene name   rpoB
Locus   AnfoCp004
Organism   Anthoceros formosae
Location Start:End   3486:6701
 
Protein   
MILRKKIELFVLPEFTEIQFEGFHRFIKYGLVKELNDFPKIEDTDQEFEFQLFSRQYQLAEPPIEERDAI
YQSITYSSDLYVPAQLTERKKGRVKKQIVFLGSIPLMNSQGTFVVNGVARVIINQILRSPGIYYNSELDR
NGIPIYTGTIISDWGRRLKLEIDGKTRIWARISKKRKVSILVLLLAMGLDIEEILGNVCYPKLLLGCMKR
KTKKEHLQSTEDAIVELYKQIYCIGGDLNFSESISKELQKKFFQQRCELGKIGRLNLNKKLNLDVPENEN
FLLPQDLLAAVDYLIKIRFGIGVPDDIDHLKNRRVRSVTDLLQDQLKLALNRLENSIRQAIRGANRREHL
PTPKSLVTSTPLITTFKEFFGSHPLSQFLDQTNPLTEVVHKRRLSSLGPGGLTRRTASFQVRDIHPSHYG
RICPIETSEGMNAGLVASLAIHAKVDNWGSLESPFYKISGVSEEEDMTFLSAGEDENYHIATGNCLALNQ
TNQEEQVTPARYRQEFVATAWNQINLRSIFPLQYFSIGTSLIPFLEHNDANRALMGFNMQRQAVPLSKPE
KCIVGTGLESQTALDSGSVIVATEGGRISYTDGRRITLLTKEKEVETKLVIYQRSNNSTCIHEKPRIQLR
EYVKKGQILADGRATAGGELALGKNILVAYMPWEGYNFEDAILISERLIHEDIYTSIHIERYEIEARVTS
QGPERITREIPHLDNYLLRHLDESGLVLPGSWVETGDVLVGKLTPQETEESLRAPEGKLLQAIFGIQVVT
AKETCLKVPLGGRGRVIDIKWIYQEKTSTTYAEIVHVYILQKREIQVGDKVAGRHGNKGIISKILPRQDM
PYLQDGTPVDMVLSPLGVPSRMNVGQIFECLLGLAGDFLQKHYRVTPFDERYEREASRKLVFSELHEASR
QTANPWLFESDNPGKSGLLDGRTGDIFEEPVTIGKAYMLKLIHQVDDKIHARSSGPYALVTQQPLRGKSR
RGGQRVGEMEVWALEGFGAAYTLEEMLTIKSDHIQARFEVLRAIVTGELIPKPETAPESFRLLVRELRSL
ALNLDHIIVSEKELRIKFKDI
    Run BLAST
 
CDS   
ATGATTTTAAGGAAAAAAATAGAGTTGTTTGTATTACCTGAATTTACAGAGATACAATTCGAAGGATTTC
ATCGCTTTATTAAGTATGGGTTAGTTAAAGAACTCAACGATTTCCCTAAAATTGAAGATACAGATTAGGA
ATTTGAATTTCAACTTTTTAGTAGGCAGTATCAACTGGCAGAACCTCCTATTGAGGAGAGAGATGCTATA
TATCAATCTATAACATATTCATCTGATTCATATGTGCCGGCTCAACTAACTGAAAGAAAAAAAGGAAGAG
TAAAAAAACAAATTGTATTTCTTGGAAGTATTCCCCTAATGAATTCCCAGGGTACTTTTGTTGTTAATGG
AGTTGCTAGAGTAATTATAAATCAAATTCTACGAAGTCCCGGCATTTATTATAATTCAGAATTAGATCGC
AACGGAATTCCTATATATACTGGCACTACTATTCCAGATTGGGGAAGAAGGTTGAAACTAGAAATTGATG
GAAAAACAAGAATCTGGGCTCGTATAAGCAAAAAAAGAAAAGTATCTATTCTAGTTTTATTATTAGCTAT
GGGTTTGGACATTGAAGAAATCCTAGGCAATGTCTGTTATCCCAAATTACTCTTAGGTTGTATGAAAAGG
AAGACGAAGAAAGAGCATCTTCAGTCAACGGAAGATGCCATAGTAGAACTTTATAAACAAATATATTGTA
TAGGCGGAGATTTAAATTTTTCTGAGTCTATAAGTAAGGAGTTGCAAAAAAAATTTTTTCAGCAGAGATG
TGAACCAGGAAAAATAGGTCGATTAAACTTAAATAAGAAACTTAATCTTGATGTACCTGAAAACGAAAAT
TTTTTATTACCACAAGATCTATTAGCTGCCGTAGATTATTCAATAAAAATTAGATTTGGCATAGGTGTAC
CTGACGATATTGATCACTTAAAAAATCGCCGTGTTCGTTCTGTAACTGACCTATTGCAAGATCAATCAAA
ATTAGCTTTGAATCGTTTAGAGAATTCGATACGGCAAGCCATACGTGGAGCAAATAGACGTGAACATTTA
CCAACTCCCAAAAGCCTAGTAACGTCAACTCCATTAATAACAACTTTTAAAGAATTCTTTGGTTCGCATC
CTTTGTCACAATTCCTAGATCAAACTAATCCATTGACAGAAGTGGTTCATAAATGGAGACTAAGTTCCTC
AGGGCCAGGAGGATTAACAAGACGAACTGCAAGTTTTCAAGTACGAGATACTCATCCTAGTTATTATGGG
TGAATTCGTCCCATTGAAACATCTGAAGGAATGAATGCCGGACTTGTTGCATCACTAGCCATTCATGCCA
AAGTTGATAATTGGGGATCTTTGGAGAGTCCATTCTATAAAATATCTGGAGTATCTGAAGAAGAAGATAT
GACTTTTTTATCAGCAGGAGAAGATGAAAACTATCACATAGCAACGGGAAATTGTTTAGCCTTGAATCAA
ACAAATCAAGAGGAACAAGTAACTCCAGCTCGATATCGACAAGAATTTGTCGCCACTGCATGGAATCAAA
TAAACCTTCGAAGTATTTTTCCTTCACAATATTTTTCTATTGGAACTTCCTCGATTCCTCTTCTTGAACA
TAATGATGCAAATTGTGCTTTAATGGGTTTTAATATGCAGTGTCAAGCTGTTCCACTTTCCAAACCTGAG
AAGTGCATTGTAGGGACAGGATTGGAAAGCCAAACAGCTCCAGATTCAGGAAGTGTAATTGTAGCCACAG
AAGGAGGAAGAATTAGTTATACCGATGGTAGAAGAATTACATTATTGACGAAGGAGAAAGAGGTAGAAAC
AAAATTGGTAATATATCAACGTTCCAATAATAGTACTTGTATACATGAGAAACCCCGAATTCAGTTGAGA
GAATACGTAAAAAAGGGACAAATTCTAGCGGATGGGAGAGCTACTGCAGGAGGAGAATCAGCTTCAGGAA
AAAATATATTAGTAGCTTATATGCCATGGGAGGGATATAATTCTGAAGATGCTATACTTATTAGTGAACG
TCTGATACATGAAGATATTTATACTTCTATTCATATTGAGAGGTATGAAATTGAAGCTCGCGTAACAAGT
CAGGGTCCCGAAAGAATTACTAGAGAAATACCTCATTTAGATAATTATTTACTTTGTCATTCAGATGAAA
GTGGTCTTGTATTACCAGGATTTTGGGTAGAAACAGGAGATGCTTCGGTTGGTAAATTGACACCTCAGGA
AACAGAAGAATCACTACGTGCTCCAGAAGGTAAATCATTACAAGCTATATTTGGGATTCAAGTAGTTACA
GCAAAAGAGACTTGTCTTAAAGTACCTTTAGGCGGAAGAGGCCGAGTCATCGATATAAAATGGATCTATC
AGGAAAAAACTTCGACAACTTATGCAGAAATTGTCCATGTATATATCCTGCAAAAGCGCGAAATACAAGT
AGGTGATAAAGTAGCTGGAAGACATGGAAATAAGGGTATTATTCCGAAAATATTGCCTAGACAGGATATG
CCTCATTTACAAGATGGAACACCTGTTGATATGGTTCTAAGTCCCTTAGGTGTACCTTTAAGGATGAATG
TGGGACAAATATTTGAATGTTTACTTGGTTTAGCAGGGGACTTCCCGCAAAAGCATTATAGAGTAACACC
TTTCGATGAAAGATATGAGAGGGAAGCTTTAAGAAAGCTAGTTTCTTCTGAATTGCATGAGGCTAGTAGA
CAAACTGCTAATCCATGGTTATTTGAATCTGATAATCCTGGAAAAAGCGGATTACTTGATGGAAGAACGG
GAGACATTTTTGAAGAACCTGTCACTATAGGAAAGGCTTATATGTTGAAATTGATCCATCAAGTTGATGA
TAAAATTCATGCATGCTCTAGTGGACCTTATGCACCTGTGACGCAATAACCTCTTAGAGGAAAATCTCGG
CGGGGGGGATAACGAGTAGGAGAAATGGAAGTTTGGGCTTTGGAAGGTTTCGGTGCCGCTTATACCTTAG
AAGAAATGCCTACTATAAAGTCTGATCATATTCAGGCCCGTTTTGAGGTACTTAGGGTCATTGTAACTGG
AGAATTGATACCCAAACCTGAAACAGCTCCAGAATCTTTTCGATTATTGGTTCGAGAATTGTGATCTCTA
GCTCCAAATTTAGATCATATTATTGTATCTGAAAAAGAATTAAGAATAAAATTTAAAGACATTTAA
    Run BLAST
 
mRNA Edited   Edits at following locations: 136 U -> C 239 C -> U 449 C -> U 454 C -> U 776 C -> U 881 C -> U 977 C -> U 1174 U -> C 1190 C -> U 1241 C -> U 1252 U -> C 1261 U -> C 1267 C -> U 1565 C -> U 1592 C -> U 1600 C -> U 1624 U -> C 1651 U -> C 1721 C -> U 1949 C -> U 1955 C -> U 2003 C -> U 2155 U -> C 2162 C -> U 2192 U -> C 2213 C -> U 2216 C -> U 2276 C -> U 2494 C -> U 2524 C -> U 2579 U -> C 2636 C -> U 2690 U -> C 2705 C -> U 2884 U -> C 2906 C -> U 2917 U -> C 2950 U -> C 3020 C -> U 3068 U -> C 3142 U -> C 3155 C -> U 

                     
                  
 
 
        
 Edited sequence 
AUGAUUUUAAGGAAAAAAAUAGAGUUGUUUGUAUUACCUGAAUUUACAGAGAUACAAUUCGAAGGAUUUC
AUCGCUUUAUUAAGUAUGGGUUAGUUAAAGAACUCAACGAUUUCCCUAAAAUUGAAGAUACAGAUCAGGA
AUUUGAAUUUCAACUUUUUAGUAGGCAGUAUCAACUGGCAGAACCUCCUAUUGAGGAGAGAGAUGCUAUA
UAUCAAUCUAUAACAUAUUCAUCUGAUUUAUAUGUGCCGGCUCAACUAACUGAAAGAAAAAAAGGAAGAG
UAAAAAAACAAAUUGUAUUUCUUGGAAGUAUUCCCCUAAUGAAUUCCCAGGGUACUUUUGUUGUUAAUGG
AGUUGCUAGAGUAAUUAUAAAUCAAAUUCUACGAAGUCCCGGCAUUUAUUAUAAUUCAGAAUUAGAUCGC
AACGGAAUUCCUAUAUAUACUGGCACUAUUAUUUCAGAUUGGGGAAGAAGGUUGAAACUAGAAAUUGAUG
GAAAAACAAGAAUCUGGGCUCGUAUAAGCAAAAAAAGAAAAGUAUCUAUUCUAGUUUUAUUAUUAGCUAU
GGGUUUGGACAUUGAAGAAAUCCUAGGCAAUGUCUGUUAUCCCAAAUUACUCUUAGGUUGUAUGAAAAGG
AAGACGAAGAAAGAGCAUCUUCAGUCAACGGAAGAUGCCAUAGUAGAACUUUAUAAACAAAUAUAUUGUA
UAGGCGGAGAUUUAAAUUUUUCUGAGUCUAUAAGUAAGGAGUUGCAAAAAAAAUUUUUUCAGCAGAGAUG
UGAACUAGGAAAAAUAGGUCGAUUAAACUUAAAUAAGAAACUUAAUCUUGAUGUACCUGAAAACGAAAAU
UUUUUAUUACCACAAGAUCUAUUAGCUGCCGUAGAUUAUUUAAUAAAAAUUAGAUUUGGCAUAGGUGUAC
CUGACGAUAUUGAUCACUUAAAAAAUCGCCGUGUUCGUUCUGUAACUGACCUAUUGCAAGAUCAAUUAAA
AUUAGCUUUGAAUCGUUUAGAGAAUUCGAUACGGCAAGCCAUACGUGGAGCAAAUAGACGUGAACAUUUA
CCAACUCCCAAAAGCCUAGUAACGUCAACUCCAUUAAUAACAACUUUUAAAGAAUUCUUUGGUUCGCAUC
CUUUGUCACAAUUCCUAGAUCAAACUAAUCCAUUGACAGAAGUGGUUCAUAAACGGAGACUAAGUUCCUU
AGGGCCAGGAGGAUUAACAAGACGAACUGCAAGUUUUCAAGUACGAGAUAUUCAUCCUAGUCAUUAUGGG
CGAAUUUGUCCCAUUGAAACAUCUGAAGGAAUGAAUGCCGGACUUGUUGCAUCACUAGCCAUUCAUGCCA
AAGUUGAUAAUUGGGGAUCUUUGGAGAGUCCAUUCUAUAAAAUAUCUGGAGUAUCUGAAGAAGAAGAUAU
GACUUUUUUAUCAGCAGGAGAAGAUGAAAACUAUCACAUAGCAACGGGAAAUUGUUUAGCCUUGAAUCAA
ACAAAUCAAGAGGAACAAGUAACUCCAGCUCGAUAUCGACAAGAAUUUGUCGCCACUGCAUGGAAUCAAA
UAAACCUUCGAAGUAUUUUUCCUUUACAAUAUUUUUCUAUUGGAACUUCCUUGAUUCCUUUUCUUGAACA
UAAUGAUGCAAAUCGUGCUUUAAUGGGUUUUAAUAUGCAGCGUCAAGCUGUUCCACUUUCCAAACCUGAG
AAGUGCAUUGUAGGGACAGGAUUGGAAAGCCAAACAGCUCUAGAUUCAGGAAGUGUAAUUGUAGCCACAG
AAGGAGGAAGAAUUAGUUAUACCGAUGGUAGAAGAAUUACAUUAUUGACGAAGGAGAAAGAGGUAGAAAC
AAAAUUGGUAAUAUAUCAACGUUCCAAUAAUAGUACUUGUAUACAUGAGAAACCCCGAAUUCAGUUGAGA
GAAUACGUAAAAAAGGGACAAAUUCUAGCGGAUGGGAGAGCUACUGCAGGAGGAGAAUUAGCUUUAGGAA
AAAAUAUAUUAGUAGCUUAUAUGCCAUGGGAGGGAUAUAAUUUUGAAGAUGCUAUACUUAUUAGUGAACG
UCUGAUACAUGAAGAUAUUUAUACUUCUAUUCAUAUUGAGAGGUAUGAAAUUGAAGCUCGCGUAACAAGU
CAGGGUCCCGAAAGAAUUACUAGAGAAAUACCUCAUUUAGAUAAUUAUUUACUUCGUCAUUUAGAUGAAA
GUGGUCUUGUAUUACCAGGAUCUUGGGUAGAAACAGGAGAUGUUUUGGUUGGUAAAUUGACACCUCAGGA
AACAGAAGAAUCACUACGUGCUCCAGAAGGUAAAUUAUUACAAGCUAUAUUUGGGAUUCAAGUAGUUACA
GCAAAAGAGACUUGUCUUAAAGUACCUUUAGGCGGAAGAGGCCGAGUCAUCGAUAUAAAAUGGAUCUAUC
AGGAAAAAACUUCGACAACUUAUGCAGAAAUUGUCCAUGUAUAUAUCCUGCAAAAGCGCGAAAUACAAGU
AGGUGAUAAAGUAGCUGGAAGACAUGGAAAUAAGGGUAUUAUUUCGAAAAUAUUGCCUAGACAGGAUAUG
CCUUAUUUACAAGAUGGAACACCUGUUGAUAUGGUUCUAAGUCCCUUAGGUGUACCUUCAAGGAUGAAUG
UGGGACAAAUAUUUGAAUGUUUACUUGGUUUAGCAGGGGACUUCCUGCAAAAGCAUUAUAGAGUAACACC
UUUCGAUGAAAGAUAUGAGAGGGAAGCUUCAAGAAAGCUAGUUUUUUCUGAAUUGCAUGAGGCUAGUAGA
CAAACUGCUAAUCCAUGGUUAUUUGAAUCUGAUAAUCCUGGAAAAAGCGGAUUACUUGAUGGAAGAACGG
GAGACAUUUUUGAAGAACCUGUCACUAUAGGAAAGGCUUAUAUGUUGAAAUUGAUCCAUCAAGUUGAUGA
UAAAAUUCAUGCACGCUCUAGUGGACCUUAUGCACUUGUGACGCAACAACCUCUUAGAGGAAAAUCUCGG
CGGGGGGGACAACGAGUAGGAGAAAUGGAAGUUUGGGCUUUGGAAGGUUUCGGUGCCGCUUAUACCUUAG
AAGAAAUGCUUACUAUAAAGUCUGAUCAUAUUCAGGCCCGUUUUGAGGUACUUAGGGCCAUUGUAACUGG
AGAAUUGAUACCCAAACCUGAAACAGCUCCAGAAUCUUUUCGAUUAUUGGUUCGAGAAUUGCGAUCUCUA
GCUCUAAAUUUAGAUCAUAUUAUUGUAUCUGAAAAAGAAUUAAGAAUAAAAUUUAAAGACAUUUAA