Chloroplast DB
Home | Search | Blast | Tribes | Organisms | RNA Edits | Links
 
Gene View
 
ID   331
Gene name   rpl21
Locus   AnfoCp076
Organism   Anthoceros formosae
Location Start:End   125882:126238
 
Protein   
MNTYAIIDTGGEQLRVEPGRFYDMRHFTLLNPSILDSNTKVLIYRVLMIHHESNIALGDSWLEDATIKGR
VLHSHFKDKITIYKMRSKKKMRRKLGYRLNLARFVVDSICFDGKEFYK
    Run BLAST
 
CDS   
ATGAATACATATGCAATAATTGATACCGGAGGTGAGCAACTCTGAGTTGAACCAGGAAGATTTTATGATA
TGCGTCACTTTACTTTACTAAATCCGAGTATTTTAGATTCAAATACTAAAGTATTAATCTATCGAGTATT
AATGATTCATCATGAATTGAATATCGCTCTTGGAGATCTCCGGTTAGAAGATGCAACAATTAAAGGAAGA
GTTTTACATTCTCACTTTAAAGACAAAATTACAATTTACAAAATGCGTTCTAAGAAAAAGATGTGACGTA
AATTAGGATATCGATTAAATTTAGCCTGATCTGTGGTGGATCCCACTTGTTTCGATGGAAAAGAATTCTA
CAAATAA
    Run BLAST
 
mRNA Edited   Edits at following locations: 43 U -> C 158 U -> C 178 C -> U 179 U -> C 181 C -> U 274 U -> C 307 U -> C 311 C -> U 322 C -> U 326 C -> U 

                     
                  
 
 
        
 Edited sequence 
AUGAAUACAUAUGCAAUAAUUGAUACCGGAGGUGAGCAACUCCGAGUUGAACCAGGAAGAUUUUAUGAUA
UGCGUCACUUUACUUUACUAAAUCCGAGUAUUUUAGAUUCAAAUACUAAAGUAUUAAUCUAUCGAGUAUU
AAUGAUUCAUCAUGAAUCGAAUAUCGCUCUUGGAGAUUCCUGGUUAGAAGAUGCAACAAUUAAAGGAAGA
GUUUUACAUUCUCACUUUAAAGACAAAAUUACAAUUUACAAAAUGCGUUCUAAGAAAAAGAUGCGACGUA
AAUUAGGAUAUCGAUUAAAUUUAGCCCGAUUUGUGGUGGAUUCCAUUUGUUUCGAUGGAAAAGAAUUCUA
CAAAUAA