Chloroplast DB

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BLAST

BLAST searches against local databases of chloroplast proteins, CDS or genomic sequences, and Arabidopsis or rice proteomes. Program:   BLAST-N BLAST-P BLAST-X TBLAST-N TBLAST-X DB:   Chloroplast Protein: Protein Chloroplast Genome: Genomic Chloroplast CDS: CDS * be sure to select the correct DB (e.g. "CDS" for gene sequences) Expect:   1.0e-100 1.0e-80 1.0e-60 1.0e-40 1.0e-20 1.0e-10 0.00001 0.0001 0.001 0.01 0.1 1.0 10.0 Matrix:   PAM30PAM70BLOSUM80 BLOSUM62BLOSUM45 * be sure to select viable gap costs after changing matrix Gap Costs:   Existence: 9 Extension: 2 Existence: 8 Extension: 2 Existence: 7 Extension: 2 Existence: 12 Extension: 1 Existence: 11 Extension: 1 Existence: 10 Extension: 1 Sequence: